FastQCFastQC Report
Wed 31 May 2023
EGAF00007938075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582299
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16600.28507691065930046No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13010.223424735402259No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11200.1923410481556726No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG8390.14408405303804403No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7640.13120407213476237No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7490.12862807595410605No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7330.1258803466947393No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG7150.1227891512779517No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6600.11334383194887848No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)