FastQCFastQC Report
Wed 31 May 2023
EGAF00007938076

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938076
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences582299
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45280.7776073804007907No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32850.5641431635637362No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16270.2794097190618565No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14620.2510737610746369No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11020.189249852738885No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG8080.13876032759802095No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7330.1258803466947393No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG7050.12107182049084748No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA6570.11282863271274723No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)