FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938077

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938077
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548501
Sequences flagged as poor quality0
Sequence length44
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT24770.4515944364732243No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA17370.3166812822583733No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT15750.2871462403897167No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA15330.2794890073126576No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12250.22333596474755743No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11320.20638066293406943No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT10490.19124851185321448No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT9930.18103886775046898No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG8610.15697327807971181No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT8350.15223308617486567No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8230.15004530529570595No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA7270.13254305826242796No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7080.12907907187042503No Hit
AAATGCGGAAACTGGAGCCGGCAGAGAATACAGGTCACCGCAGA6830.12452119503884222No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT6450.11759322225483636No Hit
CTGTTCGGTTTCCAGTTCGCCTACGCTCACTTTGGTGTTGTTAC6150.11212377005693701No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5880.10720126307882757No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC5870.10701894800556426No Hit
ACCCGGAGACTGCGGCAGCGTATCACGGGTGCCGTCGCCACCCT5790.10556042741945776No Hit
TTCTTCCAGTGCGCTCAGTTTAGAGTATGGAATGAAATGATAGT5650.1030080163937714No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5600.10209644102745484No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)