FastQCFastQC Report
Sun 21 May 2023
EGAF00007938078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548501
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT34620.6311747836375868No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT25220.4597986147700734No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA16550.3017314462507817No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA16230.2958973639063557No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12880.2348218143631461No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12450.22698226621282366No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG10830.19744722434416712No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA10240.1866906350216317No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9800.17866877179804594No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT8710.15879642881234493No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8600.15679096300644849No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC8470.1544208670540254No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7920.14439353802454324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7680.14001797626622378No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG7550.1376478803138007No Hit
AACACTCTGAAACAGGTGGATATGCGTAACT7040.12834981157737177No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT6780.12360961967252566No Hit
CTGTCTGCTGAGCAGCTGAACGTCACTGACG6470.117957852401363No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA6160.1123060851302003No Hit
CACGAAGCTCCGAACATGACCCAGACCGGTA6140.1119414549836737No Hit
TCCCAGTCTTCCCAGAAATCCGAGAACCTGA5980.10902441381146069No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5930.10811283844514413No Hit
AAAGAGCTGTACGATTCCCCGTCTGCGCAGC5720.10428422190661456No Hit
GCTGCTTCTAGCGATGCACTGGAAGCCCTGG5680.10355496161356131No Hit

[OK]Adapter Content

Adapter graph