FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938080

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938080
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557589
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG15080.2704500985492899No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10990.19709857977829548No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8930.1601538050427824No Hit
CAGTCCCAACCGCAGCGTCGTAAACGTCGCG7590.13612176710803117No Hit
ATGCGTATCAAACGTACCTCCAACCGTTCCA6650.11926347184036988No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.11495922624011592No Hit
GAACGTTGTTGCGAGGAACTGCAGCGTATGT6280.11262775987331171No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5850.10491598650619004No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5680.10186714587267683No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)