FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938081

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938081
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565460
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT27630.48862872705407984No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC23820.4212499557882078No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19970.35316379584762847No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18050.3192091394616772No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15140.26774661337671984No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT15020.2656244473525979No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA14310.253068298376543No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13560.23980476072578077No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG12020.21257029674954905No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC11700.2069111873518905No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10920.19311710819509778No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9770.1727796837972624No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT8380.14819792735118312No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8320.14713684433912214No Hit
GTTGACCCATTCGCCGTTAGCGTTAACACCATAGCCGTCAACGG8310.1469599971704453No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC8010.14165458211014043No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7330.129628974640116No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7220.1276836557846709No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6960.12308562939907332No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT6670.11795706150744528No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC6230.11017578608566478No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6190.10946839741095744No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6020.10646199554345136No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5980.10575460686874404No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)