FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938082

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938082
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences565460
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32810.5802355604286775No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG28720.5079050684398543No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20290.35882290524528704No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19150.33866232801612844No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16840.2978106320517808No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG16400.29002935663000035No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15930.2817175397021894No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14250.252007215364482No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA14060.24864711915962226No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC13920.24617125879814664No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12250.21663778162911612No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG11480.20302054964100022No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10100.17861564036359778No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10070.1780850988575673No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9770.1727796837972624No Hit
AACGGTGACATGGCTACCGGCTGGGTGAAGG8790.15544866126693313No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC8610.15226541223075019No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8210.145191525483677No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7850.13882502741131114No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7790.1377639443992502No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7740.136879708555866No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7610.13458069536306724No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6840.12096346337495135No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6520.11530435397729283No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6410.1133590351218477No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6130.10840731439889648No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG5840.10327874650726843No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)