FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938084

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938084
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550262
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT52920.961723687988631No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20140.3660074655345999No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13950.2535155980242139No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13910.25278867157826634No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG13320.24206650650053976No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA12650.229890488530918No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10880.19772399329773815No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9740.1770065895882325No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9690.17609793153079806No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9650.1753710050848505No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9170.1666478877334797No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9010.16374018194968942No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8340.15156416398006767No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8220.14938338464222498No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7790.14156892534828863No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7250.13175541832799648No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7090.1288477125442062No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5840.10613126110834475No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5770.10485913982793651No Hit
ATCCCAAAAGGCTCCTACTCCGGTTCTACTT5630.10231489726712004No Hit

[OK]Adapter Content

Adapter graph