FastQCFastQC Report
Sun 21 May 2023
EGAF00007938085

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938085
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545905
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG9950.1822661452084154No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8780.16083384471657156No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG8320.15240747016422274No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG7630.13976790833569944No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG7230.13244062611626567No Hit
GCCCGGCAGAACATCGGAGGCGTTACGGTAGTGCTGACCTACGC6850.12547970800780356No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6710.12291515923100174No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5650.10349786134950222No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)