FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences545905
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT12350.2262298385250181No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11490.21047618175323546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9980.1828156913748729No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG9760.17878568615418433No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8930.16358157554885924No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8840.16193293704948664No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG7380.13518835694855333No Hit
GACATGGCAGCTCCGCCAACCCTGCCGCAGC7080.12969289528397798No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG6990.12804425678460538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)