FastQCFastQC Report
Sun 21 May 2023
EGAF00007938087

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938087
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544516
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9650.17722160597668388No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT9580.1759360606483556No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9060.16638629535220267No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7490.1375533501311256No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG6620.12157585819333133No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6550.12029031286500305No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT6470.11882111820405644No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6110.11220974222979672No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG5980.10982230090575851No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5810.10670026225124699No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5580.1024763276010255No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG5560.10210902893578884No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)