FastQCFastQC Report
Sun 21 May 2023
EGAF00007938088

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938088
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544516
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13810.2536197283459072No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10080.18511852727927186No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9660.1774052553093022No Hit
GTTGCGACCCCACACGCCTCCGCGCGCGCTC9400.17263037266122574No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7840.143981076772767No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6840.12561614351093447No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6630.12175950752594965No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6630.12175950752594965No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6590.12102491019547634No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG6540.12010666353238474No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6190.11367893689074335No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6100.11202609289717841No Hit
GCTTCCGAACCGGAGGACAAATCTCCGCGCG5450.10008888627698725No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)