FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938089

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938089
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences544999
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC45620.8370657560839561No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT43660.80110238734383No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC42470.7792674848944677No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG32150.5899093392831913No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC22840.4190833377675922No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG21730.3987163279198677No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC19830.36385387863096996No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18930.3473400868625447No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG18210.33412905344780447No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17820.3269730770148202No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA15170.27834913458556804No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG12870.23614722228848126No Hit
AGGCGGGATGGCGATGAAGGACGCGTGCGGGCGCGGACGACGCG12650.2321105176339773No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG12390.22733986667865447No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11680.21431231983911897No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG11680.21431231983911897No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11260.2066058836805205No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11240.20623891053011106No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT10880.19963339382274098No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10790.19798201464589846No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9460.17357830014366998No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9170.16825718946273296No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG8370.15357826344635495No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8280.15192688426951242No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8240.15119293796869354No Hit
GTAACCCTGCGCGATTTTAATCTGAGAGACACCGTATTTATCGG7840.14385347496050452No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7730.14183512263325254No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7580.13908282400518165No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7500.13761493140354386No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT7490.13743144482833913No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG7380.13541309250108716No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7210.13229382072260684No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7160.1313763878465832No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7150.13119290127137848No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6850.12568830401523673No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6770.12422041141359894No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT6760.1240369248383942No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6730.12348646511278001No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC6530.11981673360868551No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6530.11981673360868551No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6520.1196332470334808No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6520.1196332470334808No Hit
TGGGGTACCGGATACCTGTTTTTCCAGGCGACCCTGAACCGGAG6470.11871581415745718No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG6460.11853232758225243No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6390.11724792155581937No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC6330.11614700210459102No Hit
GTCGAAAGCGACGGTTTTCATGCCGGTGGTGGATTTCACCGGGC6090.11174332429967761No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6030.11064240484844927No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5970.10954148539722092No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5790.10623872704353585No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)