FastQCFastQC Report
Sun 21 May 2023
EGAF00007938091

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938091
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552151
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19440.35207760196033333No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17220.3118712091438755No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16370.2964768695519885No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15780.28579138677644345No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT11780.2133474357557987No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA9890.17911766889854405No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8520.15430561567397325No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6990.12659580440857665No Hit
GAAGGTGCCGGTGCCAGCCACGCTCGGTGCAAAAATGGCGTTGG6910.12514692538816374No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6880.12460359575550892No Hit
CCAACCGGTCTGCATTTCACCATCGCTGTTCAGCAGGTACCAAT6040.10939036604117353No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5910.10703593763300256No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5580.10105931167379938No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)