FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938092

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938092
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences552151
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37990.6880364248185732No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG17480.31658006596021737No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15860.2872402657968563No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA12720.2303717642456502No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG10280.1861809541230569No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9200.16662108734748285No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8770.15883336261276354No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7830.14180903412291204No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7600.13764350693922497No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7560.1369190674290185No Hit
TCTGCGGACGGCGTAAACTGGACCACTCTGT6940.12569025502081857No Hit
TCCTACACCAACGGCAAACTGACTATCACCC6890.12478470563306052No Hit
GACACCGGCTGGCGTAAAATTAATAACGATT6490.11754031053099603No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6400.11591032163303155No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5560.10069709191869616No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)