FastQCFastQC Report
Wed 31 May 2023
EGAF00007938093

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938093
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572335
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC17770.3104824971389134No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG17130.2993002350022277No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16750.29266076685857056No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG13360.2334297221033136No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG13000.22713969965142794No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12460.2177046659735994No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG10990.19202040762839945No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10860.18974901063188518No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8970.15672639275948527No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8680.15165943022879957No Hit
ACCGATACGTTTGCCAGAATCACGGATGAATTTGCGGGTCACTG8100.14152550516742815No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7370.12877073741777106No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6870.12003459512348537No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC6570.11479290974691396No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6540.11426874120925683No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6460.1128709584421711No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6250.10920177867857113No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6180.10797871875737111No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5740.10029091353839972No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)