FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572335
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGAACAGAAACAGCTGCTGCAGGGTGACG18950.3310997929534276No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG18270.31921863943319906No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16880.2949321638550849No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG15610.2727423624275992No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA15600.2725676395817135No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13760.2404186359387422No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG13560.2369241790210279No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11800.20617295814514225No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11390.199009321463828No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG10970.19167096193662803No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10070.1759459058069138No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9860.1722767260433138No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9500.1659867035914281No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9290.1623175238278281No Hit
GTTGCTAAAGTTCAGGCAGAACGTTCCCAGG8740.15270776730411384No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG8220.14362217931805674No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7210.12597517188359963No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA6870.12003459512348537No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6790.11863681235639967No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6580.11496763259279967No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6560.11461818690102824No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA6510.11374457267159968No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT6220.10867761014091398No Hit
CAGAAACAGCTGCTGCAGGGTGACGTGGAAG5860.10238758768902828No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA5770.10081508207605687No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)