FastQCFastQC Report
Wed 31 May 2023
EGAF00007938098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510914
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG41480.811878320030377No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT37610.7361317168838591No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA21310.4170956364476213No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10060.19690202264960444No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9250.18104808245614723No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8860.17341470384448265No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5470.10706302822001354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)