FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938105

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938105
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420545
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC34840.8284487985827914No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT34560.8217907714988884No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT29530.7021840706702018No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29390.6988550571282502No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC25970.6175320120320061No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24470.5818640097968113No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG23540.5597498484109905No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT19080.45369698843167794No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG18960.4508435482528624No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18860.4484656814371827No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18470.43919200085603205No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18270.4344362672246727No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC16960.4032862119392693No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16110.3830743440059922No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG15010.35691780903351605No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA13890.3302857006979039No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC13280.315780713122258No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG12850.3055558858148355No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12680.30151351222818007No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11970.28463065783685454No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT11400.27107681698748054No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT10940.2601386296353541No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT9330.22185497390291167No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9300.2211416138582078No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8700.2068744129641299No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8640.2054476928747221No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8620.20497211951158614No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8260.1964117989751394No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC7710.1833335314889013No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT7410.17619993104186235No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6570.15622584979015325No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT6190.14718995589057057No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT6120.1455254491195948No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6000.14267200894077922No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5720.13601398185687621No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5590.13292275499649264No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5310.1262647279125896No Hit
CATGCTGTCCTGCAGCGGCATCGGTGGTGGCGGGAAGCGGGTAG5280.12555136786788573No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5260.1250757945047498No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4960.11794219405771084No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4950.11770440737614285No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4820.1146131805157593No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC4730.11247310038164764No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA4720.11223531370007965No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG4670.11104638029223984No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4650.1105708069291039No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC4600.10938187352126406No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG4540.10795515343185628No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)