FastQCFastQC Report
Sun 21 May 2023
EGAF00007938108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411314
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT45271.100618991816471No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32900.7998755208915816No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG25280.6146155978157807No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT23050.5603991111413664No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20170.49037961265602437No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20080.4881915033283574No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG19650.477737203207282No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19350.47044350544839225No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT18480.44929178194761177No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG18140.44102559115420337No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14280.34718001332315457No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13190.3206795781325216No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12660.30779404542514965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11790.2866423219243692No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11180.27181180314795994No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9320.22659087704284317No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG8470.20592540005932208No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8290.2015491814039882No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7810.1898792649897645No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC7470.18161307419635606No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7160.1740762531788366No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA7070.17188814385116966No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6770.16459444609227988No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6440.15657137855750108No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6340.15414014597120448No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6310.15341077619531548No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6230.15146579012627823No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6130.14903455753998163No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6040.14684644821231468No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5840.14198398303972148No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5740.13955275045342488No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT5510.13396091550494268No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5090.12374973864249697No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5020.12204787583208936No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC4950.12034601302168173No Hit
CGTGGCGAACAGCAGTGGCTGGCAGGCAACC4950.12034601302168173No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4720.11475417807319956No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG4230.10284113840034621No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4200.10211176862445723No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4120.10016678255541996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)