FastQCFastQC Report
Sun 21 May 2023
EGAF00007938110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences434155
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24120.5555619536801373No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22130.5097257891766765No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG15220.350566042081745No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC10990.2531354009512732No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10410.23977611682463634No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9380.21605187087560895No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9070.20891156384240653No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7600.17505268855593048No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG7520.17321002867639437No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG5990.13796915848026625No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5590.12875585908258572No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5590.12875585908258572No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5480.12622220174822357No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4980.11470557750112287No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4950.11401458004629682No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4850.11171125519687669No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4800.11055959277216662No Hit
GTGTCCCCGAACCGTCAATTCATTCCATACC4560.1050316131335583No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4440.10226762331425412No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)