FastQCFastQC Report
Sun 21 May 2023
EGAF00007938112

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938112
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG62691.6076997250830907No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16320.4185302203438513No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13780.3533913257560215No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11440.293381477986131No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8890.22798613105740428No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7490.1920828033318288No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6770.17361823478724714No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6150.15771818965163514No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4420.11335193467645972No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4150.10642772147224161No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4110.10540191210865373No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)