FastQCFastQC Report
Sun 21 May 2023
EGAF00007938114

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938114
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences404452
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG58821.4543134908468742No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16110.398316734742318No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG13950.3449111390226776No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11300.2793903850147854No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9310.2301880074767834No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8150.20150722459030984No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6960.1720846973188413No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6660.16466725346889124No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5210.1288162748607993No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)