FastQCFastQC Report
Wed 31 May 2023
EGAF00007938115

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938115
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422712
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT31980.756543462215409No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC26690.6313991559264936No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG24250.5736766403603399No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG21700.5133518802399742No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA21080.4986846836616893No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG18250.43173602831242075No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17940.4244024300232783No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT16100.3808739756619164No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15950.3773254603607184No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15090.35698063930051666No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14570.344679119589697No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14210.3361626828668219No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT13480.31889324173432504No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG13450.31818353867408544No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG13330.31534472643312705No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT12230.28932228089100853No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11440.2706334336380325No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT11100.2625901322886504No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC10980.259751320047692No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC10800.25549310168625444No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT10790.25525653399950793No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10130.23964306667423685No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10080.23846022824050417No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9920.23467514525255967No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9660.22852438539714984No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9240.2185885425537955No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT9180.21716913643331628No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT8900.2105452412044134No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8790.20794299665020155No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC8720.20628702284297581No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8650.2046310490357501No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8640.2043944813490036No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8350.19753401843335414No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8030.1899638524574651No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG7710.1823936864815761No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7650.18097428036109692No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7260.17174814057798218No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7080.1674899222165446No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7070.16725335452979806No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.16370483922860007No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC6910.16346827154185356No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6890.16299513616836048No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG6630.15684437631295065No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC6500.15376899638524574No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6470.15305929332500615No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6420.1518764548912735No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6370.15069361645754084No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6010.14217717973466568No Hit
TACCGGCAGCGGGCGGCCTGCGATATCCGCGTTGATCTTCAGCA5890.13933836749370732No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG5820.13768239368648155No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5670.1341338783852836No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC5490.129875660023846No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5130.12135922330097086No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG4990.11804727568651943No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4810.11378905732508185No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG4780.11307935426484227No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4760.1126062188913492No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT4700.11118681277087No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG4600.10882113590340468No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG4540.1074017297829255No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4540.1074017297829255No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG4420.10456291754196712No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4360.10314351142148791No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4330.10243380836124831No Hit
AGATTCAACATCCGTTTCGCTACCGTTGAAGTGCATGTAGGTGG4280.10125096992751566No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4270.10101440224076913No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)