FastQCFastQC Report
Sun 21 May 2023
EGAF00007938118

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938118
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences447384
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23860.5333226042951916No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10240.22888614702358598No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC9620.2150278060905173No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9370.2094397653916993No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8670.19379325143500883No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7830.1750174346869803No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7810.1745703914310749No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7340.164064874917297No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6670.14908892584446473No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5860.13098367398029434No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA5620.12561915490942904No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5300.11846646281494198No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5240.11712533304722565No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5170.11556068165155661No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4830.1079609463011641No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT4740.10594925164958961No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)