FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938120

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938120
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451061
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24390.5407250903979728No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22330.49505499256198165No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10210.22635519364343182No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9980.221256105050093No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8320.18445398737643023No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8250.18290209084802278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7290.16161893845843467No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5750.1274772148334704No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT5650.12526021979288832No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5580.12370832326448085No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4930.10929785550069726No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4610.10220347137083455No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC4610.10220347137083455No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4600.10198177186677634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)