FastQCFastQC Report
Sun 21 May 2023
EGAF00007938121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401084
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21510.5362966361161253No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19680.4906702835316292No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT18180.45327163387220637No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15830.3946804160724437No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15610.3891952807890617No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13460.3355905496105554No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT13370.33334663063099No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA13040.325118927705917No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT11210.27949257512142095No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT10600.26428379092658894No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA10400.25929730430533254No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10210.25456014201513893No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG9020.22489054661866342No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8860.22090135732165833No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8470.21117770841020833No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT8190.2041966271404494No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8160.20344865414726093No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7880.196467572877502No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7630.19023446460093146No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7600.189486491607743No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC7270.18125878868266995No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT7020.17502568040609945No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6940.1730310857575969No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6750.16829392346740332No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG6400.15956757188020465No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6260.15607703124532515No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA6030.15034257163088033No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5820.1451067606785611No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG5820.1451067606785611No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG5450.13588176042923678No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5370.13388716578073423No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG5310.1323912197943573No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5210.12989797648372908No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5170.1289006791594778No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT5090.12690608451097526No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG5020.1251608141935355No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4980.12416351686928423No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC4930.12291689521397015No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4910.12241824655184451No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT4870.12142094922759322No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA4860.1211716248965304No Hit
GGTACCGCTGTTCAGGGTGTACTGCTGGAACAGCTGCTTCCACG4860.1211716248965304No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT4760.11867838158590222No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4520.11269459764039454No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG4440.11070000299189196No Hit
TGCACGCGGCGCGCGAGCACCCGGCGGCAGGTGACGACGTTTAC4290.10696013802594967No Hit
CGGCAGCTTCTCAGTCGGCAGTTTGGACAGGGTTTCGGAACGCT4260.10621216503276121No Hit
CAGGGTCAGCAGACGGTGAGACGGGTGGATATCCAGGTCGCACG4210.10496554337744712No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)