FastQCFastQC Report
Sun 21 May 2023
EGAF00007938123

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938123
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424095
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13740.32398401301595164No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13160.3103078319716101No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13120.30936464707200034No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11320.2669213265895613No Hit
AACGCTACGGATGTTCGCCACGCACAGGGTGTTGTTGGTAGACG11230.26479916056543934No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10210.24074794562539054No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9820.23155189285419542No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9150.21575354578573197No Hit
ACGGCGCGGACGTTTACGACCGGCAGAGAAGATATCAGTGGTGG7780.18344946297409778No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7030.16576474610641484No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6920.16317098763248802No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5390.1270941652224148No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5380.12685836899751235No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5360.12638677654770747No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5270.12426461052358552No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4570.10775887478041477No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4350.1025713578325611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)