FastQCFastQC Report
Sun 21 May 2023
EGAF00007938124

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938124
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424095
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31400.7404001461936595No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22260.5248823966328299No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17030.4015609710088542No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11710.2761173793607564No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10970.25866845871797595No Hit
GAAGTCTCCATTGCCGAACCGACCACTTACA10920.25748947759346374No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10330.2435775003242198No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9750.22990131927987834No Hit
CGCTCCCTGCAGATCGTCGACCCAAAATACA8680.2046711232153173No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7840.18486424032351242No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7130.16812270835543924No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6040.14242091984107336No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5890.13888397646753675No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5780.13629021799360994No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5650.1332248670698782No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5500.12968792369634163No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4980.11742652000141476No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4700.11082422570414646No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4310.10162817293295134No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)