FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938125

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938125
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413641
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8410.20331640238757764No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7730.18687702621355234No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7330.1772068049347139No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7000.16922887237967224No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5900.14263576386286658No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5520.1334490536479701No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5300.12813043194460896No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4990.1206360104535092No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4950.11966898832562536No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4870.11773494406985768No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4240.10250434555568717No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4210.10177907895977431No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)