FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938126

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938126
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413641
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22560.5454004801264866No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11580.27995290602237205No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11000.26593108516805636No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10830.26182124112455No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7960.19243740344888444No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7940.1919538923849425No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7070.17092116110346894No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5860.14166874173498276No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5630.13610836449965066No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5620.1358666089676797No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA5020.1213612770494221No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4440.10733945619510639No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4300.10395487874751293No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)