FastQCFastQC Report
Wed 31 May 2023
EGAF00007938128

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938128
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384926
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64891.6857785652307198No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA10960.2847300520099967No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10770.27979403833464095No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10140.26342725614793494No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6940.18029439424720595No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6640.17250068844401262No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6590.17120173747681372No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.16626572380145796No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5200.1350909005886846No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5080.13197341826740724No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4550.11820453801509899No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA4050.1052150283431101No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG4010.10417586756935099No Hit
ATGTCTGACGAAGGCCCGGGCACCGGTCCGG3970.10313670679559186No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC3880.10079859505463387No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)