FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences400939
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64401.6062293765385756No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28610.7135748829622461No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA22300.5561943338014013No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21390.5334976143503126No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19540.487355931949748No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13060.32573533629804036No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12540.3127657823259898No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11110.27709950890285057No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10960.2733582914109129No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10290.25664751994692464No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG9620.2399367484829363No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9400.23444962949476103No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9200.22946133950551081No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8320.2075128635528098No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7560.18855736159365888No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7100.17708429461838335No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6680.16660888564095785No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6580.16411474064633275No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6560.1636159116474077No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.15513581866568232No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.14939928517804454No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5990.14939928517804454No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5590.13942270519954408No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5360.1336861717119063No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG4680.11672598574845551No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4550.11348359725544285No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4160.1037564317764049No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)