FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938133

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938133
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422364
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC33730.7986002594918128No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT33060.7827371650992984No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC26180.6198444943224327No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG25800.6108475154132454No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG25460.6027975869155515No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT23400.5540244907236412No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG22950.5433701735943405No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG22630.5357937703023932No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG22610.5353202450966466No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG20870.4941235521966834No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19790.4685531910863615No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG18750.44392988038753306No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17710.41930656968870456No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC15360.36366735801346706No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG15220.36035268157324013No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12620.2987944048261689No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12020.2845886486537678No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11520.2727505185101003No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11490.2720402307014802No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10290.24362871835667813No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9720.2301332499928971No Hit
AGTCACGTTACGAGAAGAGGTGGTTTTGCTGGAGGCCGGCTGCG9640.22823914916991034No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG9310.22042598327508975No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT9140.21640101902624279No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8830.2090613783371689No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8490.20101144983947494No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8210.19438209695902112No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT8140.19272475873890768No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT8130.19248799613603432No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG7480.1770984269492665No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG6840.16194562036537205No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA6690.1583941813222718No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6510.15413245447055146No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5970.1413472739153905No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5920.14016346090102375No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5870.138979647886657No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC5840.13826936007803697No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5750.1361384966521768No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5710.13519144624068338No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5570.13187676980045648No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5500.13021943158034302No Hit
TTACGCGTTGACAATACCGTAGGTCGTCAGCGAGATGTTTCCAT5460.12927238116884962No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5460.12927238116884962No Hit
ATCCGGGTGGTTACGGATTGCTTCCAGAGTTTCATCGTCGAAAT5280.1250106543171293No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5140.1216959778769024No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5080.12027540225966228No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5050.11956511445104223No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5020.11885482664242218No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG4930.11672396321656202No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG4640.10985784773323484No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG4460.10559612088151453No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4400.10417554526427442No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4300.1018079192355409No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)