FastQCFastQC Report
Wed 31 May 2023
EGAF00007938136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences448049
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGACAAAGTATACACCAAGGTGATGGGTC267855.978140783708925No Hit
TCTCACGAACAGGGTGTAATTGCAGAAAACG162683.630852875466746No Hit
AACTACGCGGAGGAAATCCCGCAGGATCCGG107782.405540465440164No Hit
TCTGCATGCACCGGTATCTCCTTCCTGGCGG88631.978131856113952No Hit
CTGGACACCAACTCCGTTTATGAACCGTACT74211.6562920573419424No Hit
GAGATGACTTTCGCTGGCAAATACGATGAAC68321.5248332213664129No Hit
GCTAAAGAAGAAAAAGAGCGTGCCGCGCTGG63851.4250673475445765No Hit
CTGGGCATCCGCGTGATCCCGGAAATTTCTC59611.3304348408321411No Hit
ACCGCTCAGAGCGACTACTTCCTGTCTTACT49241.0989869411604534No Hit
CAGGTGGTTTATGGCCTGCTGGACAAACTGA40660.9074900289923646No Hit
TGCAACGGCATCCTGAAGGAACTGCTGTCCA32220.7191177750647809No Hit
GGTACCTTCTCCTCTAGCACTTCTATGGATG25330.5653399516570732No Hit
GTGTCCGGCGAGGTAAACGGCCACGCAGTTC24980.5575283060558108No Hit
AACGAAAAATGGCGTAAATATAAACTGACCG23010.5135599008144198No Hit
AAAGACGTACTGGCTCCGGGCCACCCGTTCC21840.4874466855187714No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21420.4780727107972565No Hit
GAGGTGCGCAGCAAATCCGACCCAATTATGC19290.430533267566717No Hit
GGCCCGTTCTCTATCAACAACGACAAACAGG17430.3890199509428656No Hit
GGCATCTATTTCAAACCGGAACTGATGCCGA13900.31023392530727667No Hit
GACTTCGGCCGCTACGCGACCGGTGATGGTA10590.2363580769067669No Hit
AACCTGATGCGCATCGACGGTAACCCGGCCA10130.22609134268796494No Hit
GAATTTATTAACGGTCTAGCCAGCCGTTCAT9210.205557874250361No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9060.2022100261355343No Hit
GTTTCCGGTCTGATTTGCCGTAAAGCACAGC7900.1763200007142076No Hit
CCAGCGGAAGTACGCGTGTTGGTGTAACCGT7320.16337498800354427No Hit
AACTACGGCACCCTGGGCTACATCCACAACA7280.16248222850625713No Hit
CTGACCGTTCCAGACATGATACTCACATTGG5950.13279797522146017No Hit
ATGGCTCGCTTCGTTTCTGAAGAAAAAGCAT5400.12052253213376216No Hit
CTGGACGTTCTGTACTCCACCGTGGAAAACG5380.1200761523851186No Hit
GACGCGTGCCCGCAGCTGAAAACCACTGCAC5120.11427321565275228No Hit
GATCAAGCTGCTACCCAGCCGGAATCCATCC4610.1028905320623414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)