FastQCFastQC Report
Sun 21 May 2023
EGAF00007938142

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938142
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences382451
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64091.6757702293888628No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43261.131125294482169No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25320.662045595383461No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA20980.5485670059693921No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA19130.500194796196114No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13830.36161495198077664No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12690.3318072119042701No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11670.30513712867792214No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG11600.303306828848663No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG10780.28186617370591266No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10650.2784670454515742No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10400.2719302603470771No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT10260.2682696606885588No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9140.23898486342041203No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9010.23558573516607356No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG8790.22983336427411616No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7780.2034247524519481No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC7670.2005485670059694No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA7540.19714943875163093No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7100.18564469696771613No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6880.17989232607575872No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6380.16681875586676462No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6300.16472698463332558No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC5950.1555754854870297No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5690.14877722897835277No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5210.13622660157771846No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4980.1302127592815812No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4410.1153088892433279No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4340.11347858941406874No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4320.11295564660570898No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4140.10824916133047109No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)