FastQCFastQC Report
Sun 21 May 2023
EGAF00007938143

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938143
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416065
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT21940.5273214521769435No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21650.5203513874034106No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC16240.390323627317847No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT16020.3850359919724081No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG12990.31221083244204634No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12600.3028372970569502No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC12130.2915409851826037No Hit
GGTACGCTCGACGTGGCAACGTGCCAGCAGCAGACGCAGACCTT11460.2754377320851309No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11330.2723132202900989No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG11110.2670255849446601No Hit
GACCGGCCATTCCGGGGTGCGCGGACGTGGACGACCGTGAATAG11070.26606419670003484No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10910.2622186437215339No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10390.2497205965414058No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG10170.244432961195967No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC9940.23890497878937184No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA9210.22135964332496125No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA8750.210303678511771No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8730.20982298438945837No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG8650.2079002079002079No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT8310.19972840782089338No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC7100.1706464134209799No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6870.16511843101438475No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC6590.1583887133020081No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6510.15646593681275764No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6140.14757309554997416No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5860.14084337783759748No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5610.13483470130868974No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5370.12906637184093833No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5200.12498047180128104No Hit
CCAGTTACCATCTTCGGTGGTGCGTTCGACGTGGCAACGTGCCA4860.11680867172196652No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA4560.10959825988727723No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA4520.108636871642652No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4490.10791583045918307No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA4240.10190715393027532No Hit
CAGTGCACGCAGGCCTTCAGCGATGTTTTCGAACTTTGGGTTGG4220.10142645980796271No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4200.10094576568565009No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4190.10070541862449377No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)