FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007938144

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938144
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences416065
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA48031.1543869347337556No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27990.6727314241765109No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA23130.5559227524545444No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA20800.49992188720512415No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA16060.3859973802170334No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14700.35331017989977526No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14670.35258913871630637No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC12990.31221083244204634No Hit
GAAGGCCCGTCTACCGGTCCGCGCGGCCAGG12460.2994724382007619No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG12160.29226202636607257No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11640.2797639791859445No Hit
ACTAGCGAACCGTGCGAAGCGCTGGACCTGT11430.274716690901662No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11300.27159217910662997No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10600.2547678848256883No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9830.23626116111665246No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9740.23409803756624567No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA8540.20525639022748848No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8530.2050160431663322No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC8360.2009301431266749No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8060.19371973129198564No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7830.1881917488853905No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC7290.17521300758294978No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7030.16896398399288573No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6710.16127287803588383No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6710.16127287803588383No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6080.14613101318303628No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5010.12041387763931116No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4970.11945248939468592No Hit
GACGACCCGGGTGAAGGCCCGTCTACTGGCC4900.11777005996659176No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4830.11608763053849759No Hit
GAACAGGGCCCGGCGGACGATCCGGGTGAGG4500.10815617752033936No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT4470.10743513633687043No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4340.10431062454183843No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC4240.10190715393027532No Hit
GAACAGGGTCCGGCAGACGATCCGGGTGAAG4210.10118611274680639No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)