FastQCFastQC Report
Wed 31 May 2023
EGAF00007938148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443695
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA35250.7944646660431152No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC23500.5296431106954101No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18810.42393986860343247No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16610.374356258240458No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14760.33266094952613845No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14680.330857909149303No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14410.32477264787748344No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14170.3193635267469771No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13940.3141797856635752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12480.2812742987863284No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12430.2801473985508063No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8890.20036286187583813No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8270.1863892989553635No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7690.17331725622330654No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA7350.16565433462175594No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7200.16227363391518948No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7180.16182287382098062No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6700.151004631559968No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6180.13928486911053764No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5850.13184732755609144No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC5420.12215598553060097No Hit
GTGATGTTTCCGCCGCAGTCCGTGCTGTCCC5220.11764838458851237No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5090.1147184439761548No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4760.10728090242170861No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4680.10547786204487317No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)