FastQCFastQC Report
Wed 31 May 2023
EGAF00007938150

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938150
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences457611
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG65161.423916820181333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28840.6302296054946231No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC18710.4088625491957143No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11200.2447493613571352No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA10220.22333379223838587No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10040.21940032035943194No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8980.19623654151670303No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8620.18836959775879514No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7570.1654243451315637No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6290.13745298954789112No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA6050.1322083603759525No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5990.13089720308296784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5870.12827488849699853No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.12390436418704971No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5260.11494478935165457No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4870.10642226694725432No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4730.10336289993029014No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)