FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences572248
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA31220.5455676559813227No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC13950.24377542603906No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13930.243425927220366No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG12050.21057303826313065No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11850.20707805007619076No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11780.20585480421076177No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11570.20218506661447483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10990.19204960087234904No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG8160.14259551802714907No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7250.1266933217765724No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7120.12442157945506144No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6330.11061637611664873No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6270.10956787966056673No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)