FastQCFastQC Report
Sun 21 May 2023
EGAF00007938158

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938158
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences578501
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC36760.635435375219749No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31630.5467579139880484No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG25030.43266995216948634No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24870.4299041833981272No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19290.3334479974969793No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA15950.2757125743948584No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC15530.2684524313700408No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC9990.17268768766173265No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9720.1680204528600642No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG9370.1619703336727162No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9140.15799454106388752No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG9000.15557449338894833No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8420.14554858159277168No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7110.12290384977726918No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7000.12100238374695982No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6380.11028502975794338No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6280.10855642427584394No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6220.10751926098658429No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5900.10198772344386614No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5840.10095056015460646No Hit

[OK]Adapter Content

Adapter graph