FastQCFastQC Report
Sun 21 May 2023
EGAF00007938162

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938162
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences525659
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48290.9186563913107166No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27880.530381863527496No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG22040.41928322353464886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19430.36963126285291414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18920.3599291555932649No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15110.287448707241767No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13470.2562497740930908No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11970.2277141645058869No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11050.21021232395906855No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10160.19328119560399423No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9880.1879545484810495No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9040.17197460711221535No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8960.17045270793423112No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8310.15808727711310944No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8000.15218991779842064No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7380.14039519916904306No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7320.1392537747855549No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7220.13735140081307465No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7110.13525878944334635No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7020.13354665286811412No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6960.13240522848462596No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6730.12802976834792137No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG6220.11832766108827206No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6180.11756671149927996No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG6180.11756671149927996No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6080.1156643375267997No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6080.1156643375267997No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)