FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938164

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938164
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548790
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18970.34566956394978043No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13890.25310227956048764No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10390.18932560724502998No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8840.16108165236247016No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8530.15543286138595822No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7470.13611764062756246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6860.12500227773829697No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6610.12044680114433572No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6500.11844239144299276No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6460.11771351518795896No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6400.11662020080540826No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6210.11315803859399771No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5970.1087847810637949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)