FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938165

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938165
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537462
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA21220.3948186104319933No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA20020.3724914505583651No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT19860.36951449590854796No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14890.2770428420986042No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT14610.2718331714614242No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG14320.2664374411586307No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT13460.2504363099158638No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11260.20950318348087865No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT8770.16317432674309998No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8760.1629882670774864No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT8690.16168584941819142No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT8320.15480164179048939No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8200.15256892580312653No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT7260.13507931723545108No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6870.1278229902765219No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6850.12745087094529473No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6820.126892691948454No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6750.12559027428915903No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA6440.1198224246551384No Hit
AACTTCGTGCAGGATAGAGGCCTTAGCGGACGGAATGGTACCCA6370.11852000699584342No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG6370.11852000699584342No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG6320.11758970866777559No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5940.11051944137445996No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5930.11033338170884639No Hit
GCCGCTGGTAGCCGGTTTGACTTCGTGCAGAATAGACACCTTCG5880.10940308338077856No Hit
CATGCATTTCGGACGACCCAGTGCCACGTCCAGATCGGTACAGT5840.10865884471832428No Hit
ATATGCGAAGCGGCCTTCCGCGTTGTACGCTTTCTCCATCGCGT5800.10791460605587No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT5720.10642612873096144No Hit
TGGACGCACTTCGTGCAGGATGGACGCTTTTGCGCTCGGGGTAG5710.10624006906534786No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5390.10028615976571367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)