FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537462
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG50760.9444388626544761No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT48510.902575437891423No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC21150.39351619277269834No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19760.36765389925241226No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14380.2675537991523122No Hit
ATGTCCAACATGGACATCGATGGTATTAACA14330.2666235008242443No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13680.25452962255936235No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12750.23722607365730042No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9580.17824515965779905No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG9220.1715470116957106No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9000.16745369905221205No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8890.1654070427304628No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA8730.1624300880806457No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8710.16205796874941858No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7230.13452113823861034No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7070.13154418358879325No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6950.12931146760143045No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6940.12912540793581687No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6940.12912540793581687No Hit
ACCCTGTCCCTGTCTCAGCTGTACTCCCACA6830.1270787516140676No Hit
ACCACTCCGACGAAAAGCCACTTCGCAAACC6670.1241017969642505No Hit
ATCCCGCTGACCACTACCCCAACCAAATCCC6490.12075272298320626No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG6450.12000848432075198No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6240.11610123134286703No Hit
CCGACCAAGTCTCACTTCGCCAACCTGAAGG6180.11498487334918563No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5950.11070550104007354No Hit
ACCCAGGGTGAAGTTAACGTAACTGGCGTTA5810.10810066572148358No Hit
CTGGTGCAGGACTCCGTGATCGCCGGCGCTA5740.10679824806218859No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC5710.10624006906534786No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5510.10251887575307649No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5500.10233281608746293No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5430.10103039842816795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)