FastQCFastQC Report
Wed 31 May 2023
EGAF00007938170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520853
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27880.5352757879862456No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11350.21791177165150244No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9740.18700093884454924No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9520.1827770983367668No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7660.14706644677096994No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7160.13746680925328258No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6470.12421930947887408No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6260.1201874617214454No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5850.11231575895694179No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5820.11173978070588055No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG5810.11154778795552679No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5480.10521202719385316No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)