FastQCFastQC Report
Sun 21 May 2023
EGAF00007938176

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938176
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences477813
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73851.5455837325480888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43960.9200251981423695No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13680.2863044747631395No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10720.22435555332316198No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10670.22330911883937857No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG10070.21075190503397775No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT9990.2090776098599243No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG8870.18563747742317602No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8560.1791495836237189No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA8460.1770567146561521No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8450.1768474277593954No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7910.16554593533453466No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA7710.16136019739940102No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7620.1594766153285909No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7560.1582208939480508No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7460.156128024980484No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT7420.15529087739345726No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7360.1540351560129172No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6920.14482653255562322No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6870.1437800980718398No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6770.141687229104273No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6720.14064079462048962No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6350.13289717944049242No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5820.12180497391238831No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5750.12033996563509154No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5350.11196848976482432No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5330.11154991597131095No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5270.11029419459077086No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC5260.11008490769401419No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5260.11008490769401419No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5240.10966633390050082No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4850.10150414492699027No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)