FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007938182

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938182
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503954
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT70831.4054854212884509No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA24680.4897272370097271No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20750.4117439290093937No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA16910.33554649829151073No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12500.24803851145144198No Hit
TCCTACACCAACGGCAAACTGACTATCACCC12020.23851383261170664No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11580.22978287700861585No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG11000.21827389007726897No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10780.21390841227572358No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10480.20795548800088895No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10320.20478059505431048No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9950.1974386551153478No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA9400.18652496061148438No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9370.18592966818400092No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8840.17541283529845977No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8450.1676740337411748No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8410.16688031050453017No Hit
GAACCGATCTACGCTACCATCGACGACCTGG7980.15834778571060057No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7980.15834778571060057No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7280.1444576290693198No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6630.13155962647384484No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA6470.1283847335272664No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6320.12540827138984909No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6120.121439655206626No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6090.12084436277914254No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6070.12044750116082023No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5730.11370085364934102No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5190.10298558995463872No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)