FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007938184

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007938184
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences465934
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG40780.8752312559289513No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13350.28652126696055663No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11880.25497173419411334No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10970.23544107105298176No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7000.15023587031639674No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6720.14422643550374087No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6700.14379719015997974No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6650.1427240768005769No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6570.14100709542553236No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6470.1388608687067267No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6430.13800237801920445No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6050.1298467164877429No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5980.12834435778457892No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5730.12297879098756477No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC5600.1201886962531174No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5540.11890096022183398No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5330.11439388411234208No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5210.1118184120497753No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4970.10666746792464168No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)